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Biotechnology Information rna microarray data
Rna Microarray Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rna microarray data - by Bioz Stars, 2026-09
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Related Articles

Microarray:

Article Title: Prospective Breast Cancer Biomarkers Identified Using miR-526b-Driven Metabolic Alterations
Article Snippet: .. RNA microarray data (accession number GSE45827 ) was obtained from the Gene Expression Omnibus (GEO) database provided by the National Center for Biotechnology Information (NCBI; https://www.ncbi.nlm.nih.gov/geo/ )., This dataset included 130 tumor samples (41 TNBC, 30 HER2+, 29 Luminal A, 30 Luminal B) as well as 11 Normal tissue samples. ..

Article Title: Lipodystrophy and recovery are mediated by the Wnt/lipogenesis axis during skin fibrosis
Article Snippet: .. Sequencing and analysis data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE305616 (mouse dermal adipocyte bulk RNA sequencing), GSE130995 (human SSc RNA sequencing data), GSE90051 (keloid microarray data) and GSE94340 (human C-82 clinical trial microarray data. ..

Article Title: Deciphering molecular landscape of breast cancer progression and insights from functional genomics and therapeutic explorations followed by in vitro validation
Article Snippet: .. The Genome Expression Omnibus is a public archive of RNA-seq, microarray, chip, and other high throughput sequencing data hosted by Nation Centre for Biotechnology Information . ..

Article Title: Identification and validation of the protective gene BCAT2 related to amino acid metabolism in idiopathic pulmonary fibrosis
Article Snippet: .. RNA-seq data and corresponding clinical data for IPF patients were obtained from the Gene Expression Omnibus (GEO) database of the National Center for Biotechnology Information (NCBI) ( https://www.ncbi.nlm.nih.gov/geo/ ) by searching the keyword “idiopathic pulmonary fibrosis” and selecting human microarray datasets. .. The GSE53845 dataset includes lung tissue samples from 40 IPF patients and 8 normal controls and was conducted on the GPL6480 platform (Agilent-014850 Whole Human Genome Microarray 4 × 44 K G4112F).

Gene Expression:

Article Title: Prospective Breast Cancer Biomarkers Identified Using miR-526b-Driven Metabolic Alterations
Article Snippet: .. RNA microarray data (accession number GSE45827 ) was obtained from the Gene Expression Omnibus (GEO) database provided by the National Center for Biotechnology Information (NCBI; https://www.ncbi.nlm.nih.gov/geo/ )., This dataset included 130 tumor samples (41 TNBC, 30 HER2+, 29 Luminal A, 30 Luminal B) as well as 11 Normal tissue samples. ..

Article Title: Lipodystrophy and recovery are mediated by the Wnt/lipogenesis axis during skin fibrosis
Article Snippet: .. Sequencing and analysis data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE305616 (mouse dermal adipocyte bulk RNA sequencing), GSE130995 (human SSc RNA sequencing data), GSE90051 (keloid microarray data) and GSE94340 (human C-82 clinical trial microarray data. ..

Article Title: Identification and validation of the protective gene BCAT2 related to amino acid metabolism in idiopathic pulmonary fibrosis
Article Snippet: .. RNA-seq data and corresponding clinical data for IPF patients were obtained from the Gene Expression Omnibus (GEO) database of the National Center for Biotechnology Information (NCBI) ( https://www.ncbi.nlm.nih.gov/geo/ ) by searching the keyword “idiopathic pulmonary fibrosis” and selecting human microarray datasets. .. The GSE53845 dataset includes lung tissue samples from 40 IPF patients and 8 normal controls and was conducted on the GPL6480 platform (Agilent-014850 Whole Human Genome Microarray 4 × 44 K G4112F).

RNA Sequencing:

Article Title: Identification and validation of the protective gene BCAT2 related to amino acid metabolism in idiopathic pulmonary fibrosis.
Article Snippet: .. RNA-seq data and corresponding clinical data for IPF patients were obtained from the Gene Expression Omnibus (GEO) database of the National Center for Biotechnology Information (NCBI) ( h t t p s : / / w w w . n c b i . n l m . n i h . g o v / g e o /) by searching the keyword “idiopathic pulmonary fibrosis” and selecting human microarray datasets. .. The GSE53845 dataset includes lung tissue samples from 40 IPF patients and 8 normal controls and was conducted on the GPL6480 platform (Agilent-014850 Whole Human Genome Microarray 4 × 44 K G4112F).

Article Title: Lipodystrophy and recovery are mediated by the Wnt/lipogenesis axis during skin fibrosis
Article Snippet: .. Sequencing and analysis data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE305616 (mouse dermal adipocyte bulk RNA sequencing), GSE130995 (human SSc RNA sequencing data), GSE90051 (keloid microarray data) and GSE94340 (human C-82 clinical trial microarray data. ..

Article Title: Deciphering molecular landscape of breast cancer progression and insights from functional genomics and therapeutic explorations followed by in vitro validation
Article Snippet: .. The Genome Expression Omnibus is a public archive of RNA-seq, microarray, chip, and other high throughput sequencing data hosted by Nation Centre for Biotechnology Information . ..

Article Title: Identification and validation of the protective gene BCAT2 related to amino acid metabolism in idiopathic pulmonary fibrosis
Article Snippet: .. RNA-seq data and corresponding clinical data for IPF patients were obtained from the Gene Expression Omnibus (GEO) database of the National Center for Biotechnology Information (NCBI) ( https://www.ncbi.nlm.nih.gov/geo/ ) by searching the keyword “idiopathic pulmonary fibrosis” and selecting human microarray datasets. .. The GSE53845 dataset includes lung tissue samples from 40 IPF patients and 8 normal controls and was conducted on the GPL6480 platform (Agilent-014850 Whole Human Genome Microarray 4 × 44 K G4112F).

Sequencing:

Article Title: Lipodystrophy and recovery are mediated by the Wnt/lipogenesis axis during skin fibrosis
Article Snippet: .. Sequencing and analysis data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE305616 (mouse dermal adipocyte bulk RNA sequencing), GSE130995 (human SSc RNA sequencing data), GSE90051 (keloid microarray data) and GSE94340 (human C-82 clinical trial microarray data. ..

Expressing:

Article Title: Deciphering molecular landscape of breast cancer progression and insights from functional genomics and therapeutic explorations followed by in vitro validation
Article Snippet: .. The Genome Expression Omnibus is a public archive of RNA-seq, microarray, chip, and other high throughput sequencing data hosted by Nation Centre for Biotechnology Information . ..

Next-Generation Sequencing:

Article Title: Deciphering molecular landscape of breast cancer progression and insights from functional genomics and therapeutic explorations followed by in vitro validation
Article Snippet: .. The Genome Expression Omnibus is a public archive of RNA-seq, microarray, chip, and other high throughput sequencing data hosted by Nation Centre for Biotechnology Information . ..

other:

Article Title: CALB2 drives pancreatic cancer metastasis through inflammatory reprogramming of the tumor microenvironment.
Article Snippet: Abbreviations AJCC American Joint Committee on Cancer apCAFs Antigen presenting CAFs CAFs Cancer-associated fibroblasts CM Conditioned medium DEGs Differentially expressed genes DFS Disease-free survival DSS Disease-specific survival ECM Extracellular matrix EMT Epithelial to mesenchymal transition FAP Fibroblast activation protein GEM Gemcitabine GO Gene Ontology GSEA Gene set enrichment analysis GSVA Gene set variation analyses H&E Hematoxylin and eosin iCAFs Inflammatory CAFs IHC Immunohistochemistry KD Knockdown KO Knockout KPC LSL-K-RasLSLG12D/ + ; LSL-p53R172H/ + ; Pdx1-Cre mAb Monoclonal antibody MM Malignant mesothelioma MSigDB Molecular Signatures Database myCAFs myofibroblastic CAFs NCBI National Center for Biotechnology Information OS Overall survival PDAC Pancreatic ductal adenocarcinoma PDOs Patient-derived organoids PDOX Patient-derived organoid xenografts PFS Progression-free survival PSCs Pancreatic stellate cells PUMCH Peking Union Medical College Hospital RFS Recurrence free survival rhIL6 Recombinant human IL6 RT Room temperature scRNA-seq Single-cell RNA sequencing TMA Tissue microarray TME Tumor microenvironment WGCNA Weighted correlation network analysis Supplementary Information The online version contains supplementary material available at https:// doi. org/ 10.

Article Title: Loss of PTPN21 disrupted mitochondrial metabolic homeostasis and aggravated experimental pulmonary fibrosis
Article Snippet: To investigate the overall expression of PTPN21 in IPF lung tissue, we analyzed publicly available gene expression data from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) microarray dataset GSE32537 ( https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537 ) and RNA sequencing dataset GSE124685 ( https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124685 ).

Article Title: Loss of PTPN21 disrupted mitochondrial metabolic homeostasis and aggravated experimental pulmonary fibrosis.
Article Snippet: The expression of PTPN21 was decreased in fibrotic lungs of IPF and BLM-induced mouse lungs To investigate the overall expression of PTPN21 in IPF lung tissue, we analyzed publicly available gene expression data from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) microarray dataset GSE32537 ( h t t p s : / / w w w . n c b i . n l m . n i h . g o v / g e o / q u e r y / a c c . c g i ? a c c = G S E 3 2 5 3 7 ) and RNA sequencing dataset GSE124685 ( h t t p s : / / w w w . n c b i . n l m . n i h . g o v / g e o / q u e r y / a c c . c g i ? a c c = G S E 1 2 4 6 8 5 ) .



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Volcano plots showing the mature miRNAs differentially expressed in the TraxE126A mutants compared to wildtype littermates as identified by (A) miRNA sequencing and (B) miRNA <t>microarray.</t> Volcano plots showing the differentially expressed <t>small</t> <t>RNA</t> species identified using microarray analysis including (C) Precursor miRNAs (pre-miRNAs), (D) Small nucleolar RNAs (snoRNAs), (E) mature tRNAs and (F) tRNA-derived <t>small</t> <t>RNAs</t> (tsRNAs). In all the plots, the upregulated and downregulated miRNAs (false discovery rate, FDR <0.050 and log 2 fold change ≥0.200) are highlighted in red and blue, respectively. (TraxE126A, n=4; WT, n=5, all males). Largest changes were seen in tsRNA levels (majority are 5’-fragments) and mature miRNAs.
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Image Search Results


Volcano plots showing the mature miRNAs differentially expressed in the TraxE126A mutants compared to wildtype littermates as identified by (A) miRNA sequencing and (B) miRNA microarray. Volcano plots showing the differentially expressed small RNA species identified using microarray analysis including (C) Precursor miRNAs (pre-miRNAs), (D) Small nucleolar RNAs (snoRNAs), (E) mature tRNAs and (F) tRNA-derived small RNAs (tsRNAs). In all the plots, the upregulated and downregulated miRNAs (false discovery rate, FDR <0.050 and log 2 fold change ≥0.200) are highlighted in red and blue, respectively. (TraxE126A, n=4; WT, n=5, all males). Largest changes were seen in tsRNA levels (majority are 5’-fragments) and mature miRNAs.

Journal: bioRxiv

Article Title: Genetic inactivation of the Translin/Trax RNase activity alters small RNAs including miRNAs, disrupts gene expression and impairs distinct forms of hippocampal synaptic plasticity and memory

doi: 10.1101/2025.07.10.663777

Figure Lengend Snippet: Volcano plots showing the mature miRNAs differentially expressed in the TraxE126A mutants compared to wildtype littermates as identified by (A) miRNA sequencing and (B) miRNA microarray. Volcano plots showing the differentially expressed small RNA species identified using microarray analysis including (C) Precursor miRNAs (pre-miRNAs), (D) Small nucleolar RNAs (snoRNAs), (E) mature tRNAs and (F) tRNA-derived small RNAs (tsRNAs). In all the plots, the upregulated and downregulated miRNAs (false discovery rate, FDR <0.050 and log 2 fold change ≥0.200) are highlighted in red and blue, respectively. (TraxE126A, n=4; WT, n=5, all males). Largest changes were seen in tsRNA levels (majority are 5’-fragments) and mature miRNAs.

Article Snippet: The labeled RNA species are then hybridized onto Arraystar Small RNA Expression Microarray (8×15K format), scanned by an Agilent G2505C scanner followed by data processing and analysis.

Techniques: Sequencing, Microarray, Derivative Assay

(A) Venn diagram showing the overlap between mature miRNAs identified using miRNA sequencing and microarray analysis (with FDR<0.050 and log 2 fold change ≥0.200). A total of 12 miRNAs (10 upregulated and 2 downregulated) were found to be common and were used for target prediction using miRDB database. (B) An upset plot showing the shared and unique predicted mRNA target profiles in the miRDB database for the 12 common miRNAs. Only targets with miRDB Target Score ≥60 are included. (C) Top 15 KEGG pathways and (D) Gene Ontology (GO) Biological Process terms from the functional enrichment analysis of the predicted targets of the 12 common miRNAs performed using DAVID database.

Journal: bioRxiv

Article Title: Genetic inactivation of the Translin/Trax RNase activity alters small RNAs including miRNAs, disrupts gene expression and impairs distinct forms of hippocampal synaptic plasticity and memory

doi: 10.1101/2025.07.10.663777

Figure Lengend Snippet: (A) Venn diagram showing the overlap between mature miRNAs identified using miRNA sequencing and microarray analysis (with FDR<0.050 and log 2 fold change ≥0.200). A total of 12 miRNAs (10 upregulated and 2 downregulated) were found to be common and were used for target prediction using miRDB database. (B) An upset plot showing the shared and unique predicted mRNA target profiles in the miRDB database for the 12 common miRNAs. Only targets with miRDB Target Score ≥60 are included. (C) Top 15 KEGG pathways and (D) Gene Ontology (GO) Biological Process terms from the functional enrichment analysis of the predicted targets of the 12 common miRNAs performed using DAVID database.

Article Snippet: The labeled RNA species are then hybridized onto Arraystar Small RNA Expression Microarray (8×15K format), scanned by an Agilent G2505C scanner followed by data processing and analysis.

Techniques: Sequencing, Microarray, Functional Assay